createOptimalSurvData: Create survival data based on a PSI cutoff

In nuno-agostinho/psichomics: Graphical Interface for Alternative Splicing Quantification, Analysis and Visualisation

Create survival data based on a PSI cutoff

Description

Data is presented in the table for statistical analyses

Usage

createOptimalSurvData(
  eventPSI,
  clinical,
  censoring,
  event,
  timeStart,
  timeStop,
  match,
  patients,
  samples
)

Arguments

eventPSI	Numeric: alternative splicing quantification for multiple samples relative to a single splicing event
clinical	Data frame: clinical data
censoring	Character: censor using left, right, interval or interval2
event	Character: name of column containing time of the event of interest
timeStart	Character: name of column containing starting time of the interval or follow up time
timeStop	Character: name of column containing ending time of the interval (only relevant for interval censoring)
match	Matrix: match between samples and subjects
patients	Character: subject identifiers (only required if the clinical argument is not handed)
samples	Character: samples to use when assigning values per subject (if NULL, all samples will be used)

Value

Survival data including optimal PSI cutoff, minimal survival p-value and HTML element required to plot survival curves

nuno-agostinho/psichomics documentation built on Feb. 11, 2024, 11:16 p.m.