Man pages for nwvankuren/genomics-plotting
Utilities for plotting statistics from genome-wide analyses
| add_annotations | Add geom_rect() objects to a ggplot. |
| calculate_ld_decay | Bin LD values for decay plotting |
| calculate_windowed_ld | Calculate average LD values in sliding windows |
| get_cumulative_positions | Assign cumulative positions to postions split by scaffolds. |
| gwplotting | gwplotting: A package to simplify plotting genome-wide... |
| ld_roller | Function for applying to single-scaffold LD tibbles. Used by... |
| load_abbababa | Load a results file from Simon Martin's ABBABABAwindows.py... |
| load_gemma_gwas | Load a GEMMA association results file. |
| load_plink_gwas | Load a PLINK association results file. |
| load_plink_ld | Load a plink LD file |
| load_popgenWindows | Load a results file from Simon Martin's popgenWindows.py... |
| load_vcftools_stats | Load a VCFtools results file. |
| plot_genomewide_data | Plot genome-wide statistics |
| plot_region_data | Plot statistics in a particular region |
| reorder_by_scaf_len | Reorder scaffolds based on their size. |
| reorder_scaffolds | Reorder scaffolds based on assignment to chromosomes. |
