calculate_ld_decay: Bin LD values for decay plotting
In nwvankuren/genomics-plotting: Utilities for plotting statistics from genome-wide analyses
View source: R/binning_functions.R
calculate_ld_decay R Documentation
Bin LD values for decay plotting
Description
Bin LD values for decay plotting
Usage
calculate_ld_decay(input, bin_size = 200, max_dist = 50000, stat = "r2")
Arguments
input
A tibble generated by load_plink_ld
bin_size
Size of bins, in bp, in which to calculate LD
max_dist
Maximum distance between SNPs to allow.
stat
Calculate decay for r2 or dp (dprime)?
Value
A tibble
Examples
a <- system.file("extdata", "test.plink.ld.gz", package = "gwplotting" )
b <- load_plink_ld( a, max_dist = 10000 )
c <- calculate_ld_decay( b, bin_size = 200 )
c
nwvankuren/genomics-plotting documentation built on July 2, 2024, 11:39 p.m.
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View source: R/binning_functions.R
| calculate_ld_decay | R Documentation |
Bin LD values for decay plotting
Description
Bin LD values for decay plotting
Usage
calculate_ld_decay(input, bin_size = 200, max_dist = 50000, stat = "r2")
Arguments
input |
A tibble generated by load_plink_ld |
bin_size |
Size of bins, in bp, in which to calculate LD |
max_dist |
Maximum distance between SNPs to allow. |
stat |
Calculate decay for r2 or dp (dprime)? |
Value
A tibble
Examples
a <- system.file("extdata", "test.plink.ld.gz", package = "gwplotting" )
b <- load_plink_ld( a, max_dist = 10000 )
c <- calculate_ld_decay( b, bin_size = 200 )
c
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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