add_annotations | Create a tibble containing information for plotting gene... |
calculate_ld_decay | Bin LD values for decay plotting |
calculate_windowed_ld | Calculate average LD values in sliding windows |
generate_reordering_for_vcf | Generate reordering information for a VCF file |
get_cumulative_positions | Assign cumulative positions to positions split by scaffolds. |
gwplotting | gwplotting: A package to simplify plotting genome-wide... |
ld_roller | Function for applying to single-scaffold LD tibbles. Used by... |
load_abbababa | Load a results file from Simon Martin's ABBABABAwindows.py... |
load_gemma_gwas | Load a GEMMA association results file. |
load_plink_gwas | Load a PLINK association results file. |
load_plink_ld | Load a plink LD file |
load_popgenWindows | Load a results file from Simon Martin's popgenWindows.py... |
load_vcftools_stats | Load a VCFtools results file. |
plot_genomewide_data | Plot genome-wide statistics |
plot_region_data | Plot statistics in a particular region |
reorder_by_chromosome | Reorder a file by chromosome. |
reorder_by_scaf_len | Reorder scaffolds based on their size. |
reorder_scaffolds | Reorder scaffolds based on assignment to chromosomes. |
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