calculate_ld_decay: Bin LD values for decay plotting
In nwvankuren/gwplotting: Utilities for plotting statistics from genome-wide analyses
Description
Usage
Arguments
Value
Examples
View source: R/binning_functions.R
Description
Bin LD values for decay plotting
Usage
1
2
calculate_ld_decay(input, bin_size = 200, max_dist = 50000,
stat = "r2")
Arguments
input
A tibble generated by load_plink_ld
bin_size
Size of bins, in bp, in which to calculate LD
max_dist
Maximum distance between SNPs to allow.
stat
Calculate decay for r2 or dp (dprime)?
Value
A tibble
Examples
1
2
3
4
a <- system.file("extdata", "test.plink.ld.gz", package = "gwplotting" )
b <- load_plink_ld( a, max_dist = 10000 )
c <- calculate_ld_decay( b, bin_size = 200 )
c
nwvankuren/gwplotting documentation built on April 17, 2021, 2:37 p.m.
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Description Usage Arguments Value Examples
View source: R/binning_functions.R
Description
Bin LD values for decay plotting
Usage
1 2 | calculate_ld_decay(input, bin_size = 200, max_dist = 50000,
stat = "r2")
|
Arguments
input |
A tibble generated by load_plink_ld |
bin_size |
Size of bins, in bp, in which to calculate LD |
max_dist |
Maximum distance between SNPs to allow. |
stat |
Calculate decay for r2 or dp (dprime)? |
Value
A tibble
Examples
1 2 3 4 | a <- system.file("extdata", "test.plink.ld.gz", package = "gwplotting" )
b <- load_plink_ld( a, max_dist = 10000 )
c <- calculate_ld_decay( b, bin_size = 200 )
c
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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