cleanhop: Remove potential misassigned reads due to index hopping in...
In obricard/cleanhop: Index hopping correction for scRNAseq
Description
Usage
Arguments
Value
Examples
Description
Remove potential misassigned reads due to index hopping in single cell RNAseq data generated with combinatorial dual indexes.
Usage
1
cleanhop(sce, frct_value = 0.005)
Arguments
sce
A SingleCellExperiement object.
frct_value
Fraction of total reads to substract. Default value = 0.005.
Value
sce A SingleCellExperiement object.
Examples
1
2
3
4
sce <- SingleCellExperiment(assays = list(counts = as.matrix(cleanhop_counts)),
colData = cleanhop_annotations)
cleaned_sce = cleanhop(sce)
cleaned_sce = cleanhop(sce, frct_value = 0.01)
obricard/cleanhop documentation built on July 26, 2019, 8:22 a.m.
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Description Usage Arguments Value Examples
Description
Remove potential misassigned reads due to index hopping in single cell RNAseq data generated with combinatorial dual indexes.
Usage
1 | cleanhop(sce, frct_value = 0.005)
|
Arguments
sce |
A SingleCellExperiement object. |
frct_value |
Fraction of total reads to substract. Default value = 0.005. |
Value
sce A SingleCellExperiement object.
Examples
1 2 3 4 | sce <- SingleCellExperiment(assays = list(counts = as.matrix(cleanhop_counts)),
colData = cleanhop_annotations)
cleaned_sce = cleanhop(sce)
cleaned_sce = cleanhop(sce, frct_value = 0.01)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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