hdxstat-methods: Generics for hdxstats package

In ococrook/hdxstats: Statistical analysis of hydrogen deuterium exchange mass spectrometry

Generics for hdxstats package

Description

Generics for hdxstats package

Usage

## S4 method for signature 'HdxStatModel'
vcov(object)

## S4 method for signature 'HdxStatModel'
anova(object)

## S4 method for signature 'HdxStatModel'
logLik(object)

## S4 method for signature 'HdxStatModel'
likRatio(object)

## S4 method for signature 'HdxStatModel'
wilk(object)

## S4 method for signature 'HdxStatModel'
coef(object)

## S4 method for signature 'HdxStatModel'
deviance(object)

## S4 method for signature 'HdxStatModel'
residuals(object)

## S4 method for signature 'HdxStatModel'
summary(object)

## S4 method for signature 'QFeatures'
fitUptakeKinetics(
  object,
  feature = NULL,
  design = NULL,
  formula = NULL,
  start = list(a = NULL, b = 0.001, d = NULL, p = 1),
  maxAttempts = 5
)

Arguments

object	An instance of class QFeatures
feature	The rowname of feature to be modelled
design	The design defining conditions and replicates. Default is NULL.
formula	The formula for the non-linear fit.
start	The initial guess for the parameters. Parameters must match formula

Value

The variance-covariance matrix of the parameters

An analysis of variance

The log likelihod of the fitted model assuming normally distributed residuals.

The log likelihood ratio between the alternative and null models

Applies Wilk's theorem to generate a p-value based on the likelihood ratio test

Returns the coefficients of the null and alternative models

Returns the deviance of the fitted models

The residuals from the fitted models

Returns a summary of the fitted models.

Returns an instance of HdxStatModels

ococrook/hdxstats documentation built on Sept. 15, 2022, 12:24 p.m.