parse-function: Parse deuterium data into QFeature objects

In ococrook/hdxstats: Statistical analysis of hydrogen deuterium exchange mass spectrometry

Parse deuterium data into QFeature objects

Description

Parse deuterium data into QFeature objects

Usage

parseDeutData(
  object,
  assayname = "incoperation",
  rownames = NULL,
  quantcol = NULL,
  filter = NULL,
  filterScore = 0.9,
  sequence = "pep_sequence",
  charge = "pep_charge",
  design = NULL
)

Arguments

object	An object of class DataFrame
assayname	The name of assay. The Default is incoperation.
rownames	The rownames of the features. Default is NULL, in which case the rownames are extract from the sequence and charge in the object
quantcol	The columns wiht the quantitative data.
filter	Currently unused filter
filterScore	Currently usused filter score
sequence	The name of the column where the peptide sequence is stored. Default is "pep_sequence"
charge	The name of the column where the peptide charge is stored. Default is "pep_charge"
design	The design which will become the column names

Value

An instance of class QFeatures storing the quantitative mass-spectrometry data

ococrook/hdxstats documentation built on Sept. 15, 2022, 12:24 p.m.