hdxstats-utils: Compute exchangeable amides.

In ococrook/hdxstats: Statistical analysis of hydrogen deuterium exchange mass spectrometry

Compute exchangeable amides.

Description

Computes the number of exchangeable amides based on the sequnece

Normalise hdx data by putting on percentage incoperation scale or using back-exchange correction

Usage

exchangeableAmides(sequence)

normalisehdx(object, sequences = NULL, method = "pc", correction = NULL)

Arguments

sequence	The sequence of the peptide
object	An object of class QFeatures
sequences	Sequences corresponding to the hdxdata rows
method	Either "pc" or "bc". Percentgae incoporation or back-exchange correction. Default is "pc"
correction	A numeric vector indicated complete incoperation values for correction. Must be provided if method is "bc"

Value

Returns a numeric indicating the number of exchangeable amides

Returns a normalised 'QFeatures' object.

ococrook/hdxstats documentation built on Sept. 15, 2022, 12:24 p.m.