interact_qual: interact_qual

In octaviamd/interactmapper: An Interactive Plotting Tool for Dimension Reduction

Description

Generates an interactive dimension reduction plot that is color-coordinated with qualitative data related to your dataset.

Usage

interact_qual(count_data, qual_data, dim_red_meth = c("UMAP", "PCA"))

Arguments

count_data	dataframe of input data
qual_data	qualitative data used to color points of plot
dim_red_meth	dimension reduction method: "pca" or "umap" are the options available now

Value

an interactive dimension reduction plot that is color-coordinated with qualitative data, and on hover, displays sample name and the qualitative feature of interest

Examples

## Not run: 
if(interactive()){
 interact_qual(iris[,1:4], iris$Species, "UMAP")
 }

## End(Not run)

octaviamd/interactmapper documentation built on Nov. 4, 2019, 10:14 p.m.