dRep: Numerical Representation of DNA Sequences

In officialprofile/drep: Alignment-free characterization of the DNA/RNA Sequences

Description

Numerical Representation of DNA Sequences

Usage

dRep(seqs, dim = 2, genbank = FALSE, vec = list('A' = c(-1, 0, 1),
'C' = c(0, 1, 1), 'G' = c(1, 0, 1), 'T' = c(0, -1, 1)))

Arguments

seqs	vector of sequences given as strings or GenBank accession numbers
dim	number of dimensions: 2 (default) or 3
genbank	FALSE (default) - sequence, TRUE - accession number from GenBank
vec	list of unit vectors associated with nucleobases

Value

Dataframe with N row and 14 columns (dim = 2) or 26 columns (dim = 3), where each row represents one of N given sequences

officialprofile/drep documentation built on Sept. 16, 2021, 10:23 p.m.