Man pages for oganm/markerGeneProfile
Cell type marker gene profiles in whole tissue samples

findGeneFind if a marg
fullEstimateFull cell type profile estimation pipeline with plot outputs.
geom_boxvioA violin plot overlayed by a boxplot
groupRotationsCalculates rotations based on each group
listGet individual components of a list output
markerCandidatesWrite candidate marker genes to a file
memoRegMemoised version of regionize function
mgpEstimateCalculate cell type profile estimations
mgp_LesnickParkinsonsExpCrop of Lesnick et al. dataset of Parkinson's disease...
mgp_LesnickParkinsonsMetaCrop of Lesnick et al. dataset of Parkinson's disease...
mgp_sampleProfilesMock dataset for cell type profiles
mgp_sampleProfilesMetaMock metadata for the mock dataset for cell type profiles
mostVariableSelect most variable probeset
mouseMarkerGenesBrain cell type specific genes
mpg_sampleRegionHiearchyMock hierarchy of regions
nametreeDisplays a list as a tree
pickMarkersPick marker genes out of candidate lists
plotEstimatesPlot cell type profile estimates
reexportsObjects exported from other packages
regionizeCreate cell type annotations per region.
replaceElementReplaces elements of a vector based on the dictonary provided
scale01Scales vector into a 0-1 interval
scaleToIntScales vector to arbitrary interval
sepExprSeprate expression data from gene annotations
subset-.resultGet individual components of a list output
toColorTurn every member of Vector to a color from the palette
oganm/markerGeneProfile documentation built on Dec. 5, 2018, 11:26 p.m.