plotEstimates: Plot cell type profile estimates

Description Usage Arguments

View source: R/mgpEstimation.R

Description

A convenience function to plot the estimates

Usage

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plotEstimates(estimates, groups, plotNames = NULL,
  sigTest = wilcox.test, pAdjMethod = stats::p.adjust.methods,
  comparisons = "all")

Arguments

groups

A names list of groups $groups part pf the mgpEstimate function's output

plotNames

a vector of strings. full address of the plots

sigTest

function to be used in calculation of p values for comparisons

pAdjMethod

character. which method to use when adjusting p values for multiple testing correction

comparisons

a 2 by n matrix that includes group name pairs, indicating which groups should be compared when calculating the p values. or "all" which will make comparison between all available groups by setting it to combn(groups,2)

estimates.

a named list of cell type estimates. $estimates part of the mgpEstimate function's output.


oganm/markerGeneProfile documentation built on July 11, 2019, 5:18 p.m.