gseDown: Download multiple cel files from GSE
In oganm/ogbox: Stuff and things

gseDown

R Documentation

Download multiple cel files from GSE

Downloads all CEL files from GSMs related to a GSE. Optionally, a regular expression can be specified to download a subset of cel files

gseDown(
  GSE,
  regex = NULL,
  outDir,
  extension = ".cel",
  overwrite = F,
  unzip = T
)

`GSE`	GSE identifier of the dataset
`regex`	regular expression to limit files to be downloaded. Searches the regex inside GSM titles
`outDir`	directory to save the cel files
`extension`	which extension to use when saving the file
`overwrite`	should it overwrite the files if they exist
`unzip`	should it decompress downloaded files.