ohdsi-studies/LegendT2dm
Large-Scale Evidence Generation and Evaluation in a Network of Databases

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Large-Scale Evidence Generation and Evaluation in a Network of Databases

.Rbuildignore
.Renviron.bak
.gitignore
.renvignore
DESCRIPTION
Documents/Grant_cohorts.Rmd
Documents/LegendHtnTable.csv
Documents/Manuals/OperationsManual.Rmd Documents/MockCD.pdf Documents/NeedleCovariates.Rmd
Documents/PhenotypeLibraryDescriptions.csv
Documents/Protocol/Abbreviations.Rmd Documents/Protocol/Abstract.Rmd Documents/Protocol/Appendix.Rmd Documents/Protocol/AppendixReordered.Rmd Documents/Protocol/BMJOpenAbstract.Rmd Documents/Protocol/BMJOpenAcknowledgements.Rmd Documents/Protocol/BMJOpenArticleSummary.Rmd Documents/Protocol/BMJOpenMainText.Rmd Documents/Protocol/BmjOpen.Rmd Documents/Protocol/BmjOpenAppendix.Rmd Documents/Protocol/BmjTitlePage.Rmd Documents/Protocol/Disclosures.Rmd Documents/Protocol/MainText.Rmd Documents/Protocol/MedRxiv.Rmd Documents/Protocol/OHDSI_page_header.pdf
Documents/Protocol/OHDSI_toc_header.png
Documents/Protocol/Protocol.Rmd
Documents/Protocol/Protocol.bib
Documents/Protocol/ShorterAbstract.Rmd Documents/Protocol/StudySchematic.pdf
Documents/Protocol/StudySchematic.png
Documents/Protocol/StudySchematic.pptx
Documents/Protocol/bmj-open-style.docx
Documents/Protocol/bmj.csl
Documents/Protocol/header.tex
Documents/Protocol/jamia.csl
Documents/Protocol/ohdsi-protocol-style.Rmd
Documents/Protocol/ohdsi-protocol-style.docx
Documents/Protocol/style.css
Documents/Protocol/title.tex
Documents/PsModelAssessment.Rmd
Documents/grant_header.tex
LegendT2dm.Rproj
NAMESPACE
NEWS.md R/Assessment.R R/BackendDatabase.R R/CohortDiagnostics.R R/CohortMethod.R R/CovariateBalance.R R/CreateAllCohorts.R R/CreateAnalysisDetails.R R/CreateCohorts.R R/CustomCmDataObjectBuilding.R R/Export.R R/FilterByExposureCohortsSize.R R/LegendT2dm.R R/Main.R R/MetaAnalysis.R R/PrettyOutput.R R/Shiny.R R/SingleCmRun.R R/StudyDiagnostics.R R/SubmitResults.R R/prepareStagedExecution.R README.md
docker/Dockerfile
docker/README.md docker/build.R docker/install_additional_packages.R docker/install_renv_lock.R docker/run_docker.R docker/testRun.R
docs/OperationsManual.html
docs/Protocol.html
extra/CheckOutStudyResults.R extra/CheckUnitTests.R extra/CodeToRun.R extra/CodeToRunAllDrugs-OpenClaims.R extra/CodeToRunAllDrugs.R extra/CodeToRunRedShift.R extra/CodeToRunRedShiftMas.R extra/CodeToRunSglt2i.R extra/DbProfile.R extra/GenerateAllByAllDrugTcs.R extra/GenerateDiagnosticsDrug.R extra/GenerateDrugExposureCohortDefinitions.R extra/GenerateExposureCohortDefinitions.R
extra/HowToModifyPackage
extra/ManageDiagnostics.R extra/ManageDrugDiagnostics.R extra/ManageDrugResults.R extra/ManageResults.R extra/PackageMaintenance.R extra/RunCohortDiagnosticsApp.R extra/RunDrugCohortDiagnosticsApp.R extra/RunEvidenceExplorerApp.R extra/UploadCohortDiagnostics.R extra/addBalanceColumnsOnResultsDatabase.R extra/addDiagnosticsTableOnResultsDatabase.R extra/checkOutExplorer.R
extra/classGeneratorList.csv
extra/reFilterExposureSummary-OpenClaims.R
inst/cohorts/InclusionRules.csv
inst/cohorts/class/ID101100000.json
inst/cohorts/class/ID101100001.json
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man/LegendT2dm-package.Rd man/addDatabaseIdToTables.Rd man/assessPhenotypes.Rd man/assessPropensityModels.Rd man/computeCovariateBalance.Rd man/createDataModelOnServer.Rd man/createDataModelSqlFile.Rd man/createExposureCohorts.Rd man/createOutcomeCohorts.Rd man/doMetaAnalysis.Rd man/execute.Rd man/exportResults.Rd man/fetchAllDataFromServer.Rd man/filterByExposureCohortsSize.Rd man/generateAllCohortMethodDataObjects.Rd man/grantPermissionOnServer.Rd man/prepareForEvidenceExplorer.Rd man/prepareStagedExecution.Rd man/printCohortClose.Rd man/printCohortDefinition.Rd man/printCohortDefinitionFromNameAndJson.Rd man/printConceptSet.Rd man/printExitCriteria.Rd man/printInclusionCriteria.Rd man/removeResultsFromDatabase.Rd man/runCohortMethod.Rd man/unnumberAdditionalCriteria.Rd man/uploadPhenotypeResults.Rd man/uploadPsAssessmentResults.Rd man/uploadResultsToDatabase.Rd man/uploadStudyResults.Rd
renv.lock
renv.lock.Rv42
renv.lock.Rv42_2024
renv.lock.archived
renv.lock.drug
ohdsi-studies/LegendT2dm documentation built on July 4, 2025, 8:25 p.m.

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