Files in ohdsi-studies/PCE
A Package Skeleton for Replicating Published Prediction Models

.Rbuildignore

.gitignore

.gitmodules

DESCRIPTION

HydraConfig.json

NAMESPACE

PCE.Rproj

R/Aggregate.R R/CohortCovariateCode.R R/CreateAllCohorts.R R/CreateCohorts.R R/DecisionCurve.R R/Main.R R/Mappers.R R/MeasurementCohortCovariateCode.R R/MeasurementCovariateCode.R R/PCE.R R/PackageResults.R R/ageCovariateCode.R R/helpers.R README.md

_pkgdown.yml

docs/404.html

docs/articles/PopulatingSkeletonPackage.html

docs/articles/UsingSkeletonPackage.html

docs/articles/index.html

docs/authors.html

docs/bootstrap-toc.css

docs/bootstrap-toc.js

docs/docsearch.css

docs/docsearch.js

docs/index.html

docs/link.svg

docs/news/index.html

docs/pkgdown.css

docs/pkgdown.js

docs/pkgdown.yml

docs/reference/SkeletonExistingPredictionModelStudy.html

docs/reference/createCohorts.html

docs/reference/execute.html

docs/reference/getCohortCovariateData.html

docs/reference/index.html

docs/reference/packageResults.html

extras/CodeToRun.R extras/CodeUsedToPopulate.R extras/CodeUsedToPopulate2.R extras/PackageMaintenance.R extras/PopulatePackage.R extras/packageDeps.R

inst/cohorts/Black Female Persons who are statin-risk eligible not censored at statin initiation.json

inst/cohorts/Black Female Persons who are statin-risk eligible.json

inst/cohorts/Black Male Persons who are statin-risk eligible not censored at statin initiation.json

inst/cohorts/Black Male Persons who are statin-risk eligible.json

inst/cohorts/Non-Black Female Persons who are statin-risk eligible not censored at statin initiation.json

inst/cohorts/Non-Black Female Persons who are statin-risk eligible.json

inst/cohorts/Non-Black Male Persons who are statin-risk eligible not censored at statin initiation.json

inst/cohorts/Non-Black Male Persons who are statin-risk eligible.json

inst/cohorts/diabetes.json

inst/cohorts/first of AMI or ischemic stroke or death IP required.json

inst/cohorts/first of AMI or ischemic stroke or death no IP required.json

inst/cohorts/smoking.json

inst/cohorts/treated_Systolic_BP_mm_Hg.json

inst/cohorts/untreated_Systolic_BP_mm_Hg.json

inst/doc/PopulatingSkeletonPackage.pdf

inst/doc/PopulatingSkeletonPackage.tex

inst/doc/UsingSkeletonPackage.pdf

inst/doc/UsingSkeletonPackage.tex

inst/settings/CohortsToCreate.csv

inst/settings/CustomCovariates.csv

inst/settings/HDL-C_mgdL_age_concepts.csv

inst/settings/HDL-C_mgdL_age_scaleMap.rds

inst/settings/HDL-C_mgdL_concepts.csv

inst/settings/HDL-C_mgdL_scaleMap.rds

inst/settings/Total_Cholesterol_mgdL_age_concepts.csv

inst/settings/Total_Cholesterol_mgdL_age_scaleMap.rds

inst/settings/Total_Cholesterol_mgdL_concepts.csv

inst/settings/Total_Cholesterol_mgdL_scaleMap.rds

inst/settings/log_age__ageMap.rds

inst/settings/log_age__squared_ageMap.rds

inst/settings/pooled_female_black_finalMap.rds

inst/settings/pooled_female_black_model.csv

inst/settings/pooled_female_non_black_finalMap.rds

inst/settings/pooled_female_non_black_model.csv

inst/settings/pooled_male_black_finalMap.rds

inst/settings/pooled_male_black_model.csv

inst/settings/pooled_male_non_black_finalMap.rds

inst/settings/pooled_male_non_black_model.csv

inst/settings/treated_Systolic_BP_mm_Hg_concepts.csv

inst/settings/treated_Systolic_BP_mm_Hg_scaleMap.rds

inst/settings/untreated_Systolic_BP_mm_Hg_concepts.csv

inst/settings/untreated_Systolic_BP_mm_Hg_scaleMap.rds

inst/sql/sql_server/Black Female Persons who are statin-risk eligible not censored at statin initiation.sql

inst/sql/sql_server/Black Female Persons who are statin-risk eligible.sql

inst/sql/sql_server/Black Male Persons who are statin-risk eligible not censored at statin initiation.sql

inst/sql/sql_server/Black Male Persons who are statin-risk eligible.sql

inst/sql/sql_server/CreateCohortTable.sql

inst/sql/sql_server/GetCounts.sql

inst/sql/sql_server/Non-Black Female Persons who are statin-risk eligible not censored at statin initiation.sql

inst/sql/sql_server/Non-Black Female Persons who are statin-risk eligible.sql

inst/sql/sql_server/Non-Black Male Persons who are statin-risk eligible not censored at statin initiation.sql

inst/sql/sql_server/Non-Black Male Persons who are statin-risk eligible.sql

inst/sql/sql_server/diabetes.sql

inst/sql/sql_server/first of AMI or ischemic stroke or death IP required.sql

inst/sql/sql_server/first of AMI or ischemic stroke or death no IP required.sql

inst/sql/sql_server/smoking.sql

inst/sql/sql_server/treated_Systolic_BP_mm_Hg.sql

inst/sql/sql_server/untreated_Systolic_BP_mm_Hg.sql

man/PCE.Rd man/createCohorts.Rd man/execute.Rd man/getAgeCovariateData.Rd man/getCohortCovariateData.Rd man/getMeasurementCohortCovariateData.Rd man/getMeasurementCovariateData.Rd man/packageResults.Rd vignettes/PopulatingSkeletonPackage.rmd vignettes/UsingSkeletonPackage.rmd

ohdsi-studies/PCE documentation built on Feb. 15, 2021, 6:33 a.m.

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ohdsi-studies/PCE
A Package Skeleton for Replicating Published Prediction Models

Files in ohdsi-studies/PCE
A Package Skeleton for Replicating Published Prediction Models

R Package Documentation

Browse R Packages

We want your feedback!

ohdsi-studies/PCE A Package Skeleton for Replicating Published Prediction Models

Files in ohdsi-studies/PCE A Package Skeleton for Replicating Published Prediction Models

R Package Documentation

Browse R Packages

We want your feedback!

ohdsi-studies/PCE
A Package Skeleton for Replicating Published Prediction Models

Files in ohdsi-studies/PCE
A Package Skeleton for Replicating Published Prediction Models