getSpec_modified: Modification to xcms::getSpec()
In ohgane/ShotgunLipidomicsR: Utility Functions for Analysis/Visualization of ShotgunLipidomics Data.
Description
Usage
Arguments
Value
Description
A function that extract scan(s) from a xcmsRaw object.
A bug that prevented scan averaging of MS2 data was removed.
Incontrast to the original getSpec, scanrange must be provided (default NULL).
Usage
1
getSpec_modified(object, scanrange = NULL, ...)
Arguments
prmz
A numeric value. Numeric vectors cannot be used
(in that cases, only the first element will be used).
xraw
An object of class xcmsRaw, which is read into by xcmsRaw()
with includeMSn = TRUE option.
mzabs
Search tolerance in m/z (not ppm).
Value
A data frame with columns of the names mz and intensity.
ohgane/ShotgunLipidomicsR documentation built on May 24, 2019, 11:55 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value
Description
A function that extract scan(s) from a xcmsRaw object.
A bug that prevented scan averaging of MS2 data was removed.
Incontrast to the original getSpec, scanrange must be provided (default NULL).
Usage
1 | getSpec_modified(object, scanrange = NULL, ...)
|
Arguments
prmz |
A numeric value. Numeric vectors cannot be used (in that cases, only the first element will be used). |
xraw |
An object of class |
mzabs |
Search tolerance in m/z (not ppm). |
Value
A data frame with columns of the names mz and intensity.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.