CombineBaseCounts: Combine BaseCounts

In okg3/RNAEditingAnalysisTools: Conduct Differential RNA Editing Analysis

Description

CombineBaseCounts sums a vector of base counts

Usage

CombineBaseCounts(x, na.rm = FALSE)

Arguments

x	character vector in REDItools BaseCount format
na.rm	logical. Should missing values (including NaN) be removed?

Details

The input to CombineBaseCounts should be a vector of character strings in REDItools BaseCount format: [A, C, G, T] where A, C, G, and T represent the number of reads with As, Cs, Gs, and Ts mapping to that site, respectively

Value

A string with aggregated base counts

Examples

bc <- c("[6, 0, 4, 0]", "[2, 0, 8, 0]", NA)
CombineBaseCounts(bc, na.rm = TRUE)

okg3/RNAEditingAnalysisTools documentation built on April 2, 2020, 5:04 a.m.