get_TCGA_sd_pancancer: Get the standard deviation of the TPM expression of each gene...
In olapuentesantana/easierData: easier internal data and exemplary dataset from IMvigor210CoreBiologies package
Description
Usage
Value
References
Examples
View source: R/easierData_retrieval.R
Description
Obtain the standard deviation (sd) of the TPM expression of each gene
across all TCGA cancer types. It is required for normalization of input
TPM gene expression data.
Usage
1
Value
A numeric vector with gene TPM sd values.
References
The Cancer Genome Atlas Research Network., Weinstein, J.,
Collisson, E. et al. The Cancer Genome Atlas Pan-Cancer analysis project.
Nat Genet 45, 1113–1120 (2013). https://doi.org/10.1038/ng.2764
Examples
1
2
3
if (interactive()) {
TCGA_sd_pancancer <- get_TCGA_sd_pancancer()
}
olapuentesantana/easierData documentation built on Dec. 22, 2021, 4:19 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Value References Examples
View source: R/easierData_retrieval.R
Description
Obtain the standard deviation (sd) of the TPM expression of each gene across all TCGA cancer types. It is required for normalization of input TPM gene expression data.
Usage
1 |
Value
A numeric vector with gene TPM sd values.
References
The Cancer Genome Atlas Research Network., Weinstein, J., Collisson, E. et al. The Cancer Genome Atlas Pan-Cancer analysis project. Nat Genet 45, 1113–1120 (2013). https://doi.org/10.1038/ng.2764
Examples
1 2 3 | if (interactive()) {
TCGA_sd_pancancer <- get_TCGA_sd_pancancer()
}
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.