get_lr_frequency_TCGA: Get the frequency of each ligand-receptor pair feature across...

In olapuentesantana/easierData: easier internal data and exemplary dataset from IMvigor210CoreBiologies package

Description

Obtain the frequency of each ligand-receptor pair feature across the whole TCGA database. Only ligand-receptor pairs with frequency different from zero are kept. Each cell-cell pair feature score is calculated as the sum of the inverse of the frequency of all the active ligand-receptor pairs.

Usage

get_lr_frequency_TCGA()

Value

A numeric vector with the frequency of each ligand-receptor pair feature.

References

The Cancer Genome Atlas Research Network., Weinstein, J., Collisson, E. et al. The Cancer Genome Atlas Pan-Cancer analysis project. Nat Genet 45, 1113–1120 (2013). https://doi.org/10.1038/ng.2764

Examples

if (interactive()) {
    lr_frequency <- get_lr_frequency_TCGA()
}

olapuentesantana/easierData documentation built on Dec. 22, 2021, 4:19 a.m.