API for oldhamlab/Copeland.2021.hypoxia.flux
What the Package Does (One Line, Title Case)
| Global functions | |
|---|---|
| %nin% | Man page |
| Copeland.2021.hypoxia.flux | Man page |
| Copeland.2021.hypoxia.flux-package | Man page |
| analyze_twoby_fluxes | Source code |
| annot_fluxes_main | Source code |
| annot_fluxes_oemyc | Source code |
| annot_fluxes_simyc | Source code |
| annot_mids_main | Source code |
| annot_nad | Source code |
| annot_pairwise | Source code |
| annot_twoby_densities | Source code |
| arrange_fluxes | Source code |
| arrange_m2 | Source code |
| arrange_m4 | Source code |
| arrange_m5 | Source code |
| arrange_m6 | Source code |
| arrange_m7 | Source code |
| arrange_s1 | Source code |
| arrange_s6 | Source code |
| arrange_s7 | Source code |
| arrange_s8 | Source code |
| arrange_s9 | Source code |
| calculate_biomass | Source code |
| calculate_biomass_equations | Source code |
| calculate_cells_per_dna | Source code |
| calculate_ratios | Source code |
| cells_per_dna | Man page |
| clean_biomass | Source code |
| clean_dna_count_hypoxia | Source code |
| clean_dna_per_cell | Source code |
| clean_flux_meta | Source code |
| clean_model_fluxes | Source code |
| clean_nad | Source code |
| clean_technical_replicates | Source code |
| clean_viability | Source code |
| combine_fluxes | Source code |
| correction_factors | Man page |
| count_rnaseq | Source code |
| create_resources | Source code |
| dds_to_symbols | Source code |
| finalize_nad | Source code |
| find_gsea_overlap | Source code |
| find_rnaseq_overlap | Source code |
| flux_measurements | Man page |
| fluxes | Man page |
| format_flux_table | Source code |
| format_fluxes | Source code |
| format_metab_targeted | Source code |
| format_mids | Source code |
| format_reactions | Source code |
| format_time_course_mids | Source code |
| get_m5_citrate | Source code |
| get_unique_symbol_ids | Source code |
| growth_rates | Man page |
| identify_deg | Source code |
| import_qbias | Source code |
| k | Man page |
| make_std_curves | Source code |
| mids | Man page |
| model_reactions | Man page |
| new_tbl_se | Source code |
| normalize_densities | Source code |
| normalize_qpcr | Source code |
| path_to_data | Source code |
| path_to_manuscript | Source code |
| path_to_plots | Source code |
| path_to_reports | Source code |
| plot_blot | Source code |
| plot_cells_per_dna | Source code |
| plot_expression | Source code |
| plot_growth_curve | Source code |
| plot_growth_rates | Source code |
| plot_gsea | Source code |
| plot_high_fluxes | Source code |
| plot_labeling_rate | Source code |
| plot_lactate_mids | Source code |
| plot_lf_mids | Source code |
| plot_low_fluxes | Source code |
| plot_manuscript_mids | Source code |
| plot_mid_time_course | Source code |
| plot_mids | Source code |
| plot_myc | Source code |
| plot_nad | Source code |
| plot_pasmc_mids | Source code |
| plot_rnaseq_goi | Source code |
| plot_rnaseq_pca | Source code |
| plot_rnaseq_venn | Source code |
| plot_rnaseq_volcano | Source code |
| plot_tfea | Source code |
| plot_time_lines | Source code |
| plot_twoby_densities | Source code |
| plot_twoby_fluxes | Source code |
| read_data | Source code |
| read_multi_excel | Source code |
| run_gsea | Source code |
| run_tfea | Source code |
| summarize_mids | Source code |
| tbl_to_se | Source code |
| theme_patchwork | Source code |
| theme_plots | Source code |
| vst_rnaseq | Source code |
| write_figures | Source code |
| write_matlab_input | Source code |
