fluxes: Calculated fluxes

Description Usage Format Details

Description

A data set containing metabolite fluxes.

Usage

1

Format

An object of class tbl_df (inherits from tbl, data.frame) with 1120 rows and 9 columns.

Details

metabolite

name of measurement

abbreviation

abbreviated metabolite name

cell_type

lf = lung fibroblasts
pasmc = pulmonary artery smooth muscle cells

experiment

02 = 0.2% oxygen for hypoxia
05 = 0.5% oxygen for hypoxia
bay = molidustat treatment
05-bay = 0.5% oxygen plus molidustat

batch

a group of biological replicates analyzed similarly

date

start date of an experiment

oxygen

ambient oxygen level

treatment

None = no treatment
DMSO = 0.1% DMSO
BAY = 10 μM molidustat

flux

fmol / cell / h, positive fluxes indicate secretion, negative fluxes indicate uptake


oldhamlab/Copeland.2021.hypoxia.flux documentation built on Feb. 5, 2022, 8:31 p.m.