Man pages for olobiolo/siscreenr
Analyze Genome-Wide siRNA Screening Campaigns
| attach_annotation | add annotation to screen object |
| build_screen | build screen object |
| check_scan | check scan completion |
| clean_column_names | clean up superfluous characters in column names |
| ddCt | ddCt calculation |
| drawmeabarplot | draw a screen overview as a barplot |
| fetch_files | fetch ScanR result/export files |
| flag_hits | flag hits |
| highlights | highlight genes |
| hitscore | assign hit scores |
| insert_zeros | insert zeros into a character vector |
| layouts | collate layout file for a screen |
| mask_values | mask values |
| meanG | geometric mean |
| normalize | normalize screen data |
| patch_annotation | fix missing gene types in annotation file |
| percentage | normalized percent inhibition/activation |
| plate.type | plate type conversion |
| plot_screen_progress | plot campaign progress over time |
| pow | power functions |
| quartile | quartile method of hit selection |
| retry | rerun a function call in case of error |
| separate_flag | separate plate flags into well flags |
| siscreenr-package | siscreenr: High Throughput Data Analysis |
| update_annotation | update library annotation |
| zscore | calculate (robust) zscore |
