In omicsr/dmapaq: DNA Methylation Arrays Processing And Quality-Control

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DNA Methylation Arrays Processing And Quality-Control


Installation

# Install dmapaq from CRAN:
install.packages("dmapaq")

# Or the the development version from GitHub:
# install.packages("remotes")
remotes::install_github("umr1283/dmapaq")

Overview

• read_idats() allows to efficiently import idats files mostly using minfi functions.
• qc_idats() allows to compute quality-control of methylation array from Illumina using a rmarkdown template.

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Getting help

If you encounter a clear bug, please file a minimal reproducible example on github.
For questions and other discussion, please contact the package maintainer.

Code of Conduct

Please note that the dmapaq project is released with a Contributor Code of Conduct. By contributing to this project, you agree to abide by its terms.

omicsr/dmapaq documentation built on Oct. 13, 2021, 1:08 p.m.