PathwayAnalysis: Pathway enrichment Analysis
In omtarful/pcoskbR:

PathwayAnalysis

R Documentation

Pathway enrichment Analysis

Description

For selected diseases, this tool gives a list of enriched pathways.

Usage

PathwayAnalysis(disease_list, dataset = c("miRNAs", "Genes"), database = c("KEGG", "Reactome"))

Arguments

`disease_list`	Diseases for which comorbidity with PCOS will be analyzed. A possible list of diseases can be retrieved using the `listDiseases` function.
`dataset`	Dataset. It can either be "miRNAs" or "Genes".
`database`	Database from which pathways will be extracted. It can either be "KEGG" or "Reactome".

Value

data.frame of enriched pathways.

Author(s)

Omar Hassoun

Examples

PathwayAnalysis(disease_list = c("Tangier Disease", "Hypoalphalipoproteinemia", "Neuropathy"),
         dataset = "Genes",
         database = "KEGG")

omtarful/pcoskbR documentation built on March 20, 2022, 8:22 a.m.