getGeneNetworkAnalysis: Gene Network Analysis

In omtarful/pcoskbR:

Gene Network Analysis

Description

This function produces as output a list of genes with their network properties and tissue specific interactions given a set of diseases. For more details of the methodology refer to PCOSKBR2: a database of genes, diseases, pathways, and networks associated with polycystic ovary syndrome.

Usage

getGeneNetworkAnalysis(disease_list, database = c("KEGG", "Reactome"))

Arguments

disease_list	Diseases for which comorbidity with PCOS will be analyzed. A possible list of diseases can be retrieved using the listDiseases function.
database	Database from which pathways will be extracted. It can either be "KEGG" or "Reactome".

Value

A data.frame containing genes with network properties and tissue specific interactions.

Author(s)

Omar Hassoun

Examples

getGeneNetworkAnalysis(disease_list =  c("Psychomotor Disorders", "Psychosexual Disorders" , "Pubertal Disorder"),
database = "Reactome")

omtarful/pcoskbR documentation built on March 20, 2022, 8:22 a.m.