create_module: Create a new module

In onertipaday/pyCOMPASSR: API to 'Python' Library 'pyCOMPASS'

Description

Create a new module

Usage

create_module(
  compendium,
  biofeatures = NULL,
  samplesets = NULL,
  normalization = "legacy"
)

Arguments

compendium	the compendium selected for the analysis
biofeatures	list of BiologicalFeature objects from get_bf
samplesets	a list of <samplesets> objects from get_ss
normalization	the normalization to be used for the inference ('legacy' as default)

Value

a Module object

Examples

## Not run: 
gene_names <-c('VIT_05s0094g00350','VIT_07s0031g02630','VIT_19s0015g02480','VIT_08s0007g08840')
genes <- get_bf(compendium = get_compendium(), gene_names = as.list(gene_names))
mod1 <- create_module(compendium = get_compendium, biofeatures = genes)

## End(Not run)

onertipaday/pyCOMPASSR documentation built on Feb. 27, 2020, 9 a.m.