pathM: pathway build function

In onesand1/GRC: Gene regulation and correlation between target and pathway

Description

Based on the expression level, this function constructs a predicted pathway map

Usage

pathM(data, FC = 2, FDR = 0.05, group = "med", scale = 1)

Arguments

data	the dataset for gene expression. Consisting of a matrix. Rownames are gene names, colnames are sample ID.
FC	The fold change for difference between target gene and other genes.
FDR	The False discovery rate for results. This also called adjusted P-value by the method of Benjami and Hochberg.
group
scale

Examples

##---- Should be DIRECTLY executable !! ----
##-- ==>  Define data, use random,
##--	or do  help(data=index)  for the standard data sets.

onesand1/GRC documentation built on Dec. 22, 2020, 1:38 a.m.