GP: the Corelated Analysis of Expression Profile

In onesand1/GRC: Gene regulation and correlation between target and pathway

Description

The corelated analysis of expression profile between genesets score and gene expression.

Usage

GP(expression, geneset, gsva,plot=TRUE)

Arguments

expression	a matrix for expression profile
geneset	a string for gmt file path or a list for one or more gene lists.
gsva	the option for GSVA analysis refer to the package GSVA.
plot	A logical parameter. This parameter is defined to show whether the correlation is visualized.default plot=TRUE.

Value

cor_res	The analysis results of spearman correlation between pathway/Go Score and gene expression
geneSet.name	The Geneset label
geneSet.gene	The gene list of Geneset
geneSet.score	The Score for Geneset by GSEA algorithm

Examples

##---- Should be DIRECTLY executable !! ----
##-- ==>  Define data, use random,
##--	or do  help(data=index)  for the standard data sets.

onesand1/GRC documentation built on Dec. 22, 2020, 1:38 a.m.