SL: Diferential analysis of mRNA expression

In onesand1/GRC: Gene regulation and correlation between target and pathway

Description

Diferential analysis of mRNA expression

Usage

SL(data,group = "group", expression = "expression", exp_type = "rpkm")

Arguments

data	a data frame,including 3 or more columns ('sample','gene name','group') for one gene or many genes.
group	a character of group column name for sample groups
expression	a gene name or a vector of gene names for one gene or many genes
exp_type	the expression data formula mode. including 'RPKM','FPKM','TPM'.

Value

gene	Gene names or IDs.
P	P value for differential analysis based on expression.
FC	Fold change for differential analysis based on expression.
FC_type	The Fold change type.
method	The differential analysis method.

Examples

##---- Should be DIRECTLY executable !! ----
##-- ==>  Define data, use random,
##--	or do  help(data=index)  for the standard data sets.

onesand1/GRC documentation built on Dec. 22, 2020, 1:38 a.m.