assign_ps_barcol: Assign colors to phyloseq::plot_bar object

In ong8181/macam: A collection of miscellaneous R functions for ecology

Assign colors to phyloseq::plot_bar object

Description

assign_ps_barcol Assign colors to phyloseq::plot_bar object

Usage

assign_ps_barcol(
  gg_obj,
  other_name = c("Others", "Undetermined"),
  other_col = c("lightgray", "darkgray"),
  palette = "igv",
  manual_col_code = NULL,
  legend_title = NULL
)

Arguments

gg_obj	ggplot2 object.
other_name	Character. The name of "other" taxa.
other_col	Character. The colors to fill "other" taxa.
palette	Character. Currently only "igv" is available.
manual_col_code	Character vector. The colors to fill "other" taxa.
legend_title	Character. The title of the color legend.

Value

ggplot2 object.

Examples

# taxa_name_summarize(ps_obj, "phylum", top_taxa_n = 10)

ong8181/macam documentation built on April 11, 2024, 12:58 p.m.