plot_rarefy: Visualize rarefaction curve
In ong8181/macam: A collection of miscellaneous R functions for ecology
plot_rarefy R Documentation
Visualize rarefaction curve
Description
plot_rarefy visualizes a coverage-based rarefaction.
Usage
plot_rarefy(ps_obj, plot_rarefied_point = TRUE, ran_seed = 1234)
Arguments
ps_obj
Phyloseq object.
plot_rarefied_point
Logical. Specify whether rarefied reads are plotted.
ran_seed
Numeric. Random seed.
Value
ggplot object (g_rare). User may further edit the figure using ggplot2.
Examples
# plot_rarefy(ps_obj)
ong8181/macam documentation built on Oct. 15, 2024, 7:04 a.m.
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| plot_rarefy | R Documentation |
Visualize rarefaction curve
Description
plot_rarefy visualizes a coverage-based rarefaction.
Usage
plot_rarefy(ps_obj, plot_rarefied_point = TRUE, ran_seed = 1234)
Arguments
ps_obj |
Phyloseq object. |
plot_rarefied_point |
Logical. Specify whether rarefied reads are plotted. |
ran_seed |
Numeric. Random seed. |
Value
ggplot object (g_rare). User may further edit the figure using ggplot2.
Examples
# plot_rarefy(ps_obj)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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