| ggqualimap | ggqualimap: Plots of Statistics Collected by Qualimap from... |
| plot_bias_profile | Plot Qualimap bias profile |
| plot_coverage_profile | Plot Qualimap coverage profiles |
| plot_genomic_origin | Plot Qualimap reads across genomic origin |
| plot_junction_analysis | Plot Qualimap junction analysis |
| plot_read_alignment | Plot Qualimap read alignment |
| qualimap | Extract Qualimap summary tables |
| qualimap_tables | Extract all summary tables for a particular sample |
| test_ggqualimap | Run a set of tests |
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