test_ggqualimap: Run a set of tests

In openanalytics/ggqualimap: Plots of Statistics Collected by Qualimap from RNASeq Data

Description

Runs a set of tests to check if ggqualimap is working correctly.

Usage

test_ggqualimap(verbose = FALSE, pkg = "pkg", silent = FALSE)

Arguments

verbose	If TRUE sets ggqualimap_verbose to TRUE for the duration of the tests.
pkg	Root directory name under which all package content (ex: DESCRIPTION, src/, R/, inst/ etc..) resides.
silent	Logical, default FALSE. When TRUE it will not raise error on in case of test fails.

Details

Runs a series of tests. These can be used to see features and examples of usage, too. Running test_ggqualimap will tell you the full location of the test file(s) to open.

Value

When silent equals to TRUE it will return TRUE if all tests were successful. FALSE otherwise. If silent equals to FALSE it will return TRUE if all tests were successful. Error otherwise.

See Also

qualimap plot_read_alignment plot_bias_profile plot_coverage_profile plot_junction_analysis plot_genomic_origin

Examples

## Not run: 
ggqualimap:::test_ggqualimap()

## End(Not run)

openanalytics/ggqualimap documentation built on May 24, 2019, 2:28 p.m.