API for oriolarques/GEGVIC
A workflow to analyse Gene Expression, Genetic Variations and Immune cell Composition of tumour samples using Next Generation Sequencing data.
| Global functions | |
|---|---|
| auto_rep | Man page Source code |
| ge_annot | Man page Source code |
| ge_diff_exp | Man page Source code |
| ge_gsea | Man page Source code |
| ge_pca | Man page Source code |
| ge_single | Man page Source code |
| ge_volcano | Man page Source code |
| gv_extr_mut_sig | Man page Source code |
| gv_mut_load | Man page Source code |
| gv_mut_signatures | Man page Source code |
| gv_mut_summary | Man page Source code |
| ic_deconv | Man page Source code |
| ic_plot_comp_celltypes | Man page Source code |
| ic_plot_comp_samples | Man page Source code |
| ic_raw_to_tpm | Man page Source code |
| ic_score | Man page Source code |
| module_ge | Man page Source code |
| module_gv | Man page Source code |
| module_ic | Man page Source code |
| preprocess_ge_counts | Man page Source code |
| preprocess_ge_meta | Man page Source code |
