plot_SS_panel: Plot silver-standard (SS) panel

In oslerinhealth-releases/baker: Bayesian Analysis Kit for Etiology Research

Description

Plot silver-standard (SS) panel

Usage

plot_SS_panel(slice, data_nplcm, model_options, clean_options, bugs.dat,
  res_nplcm, bg_color, select_latent = NULL, exact = TRUE,
  top_SS = 1, cexval = 1, srtval = 0, prior_shape = "interval")

Arguments

slice	the index of measurement slice for SS.
data_nplcm	See nplcm
model_options	See nplcm
clean_options	See clean_perch_data
bugs.dat	Data input for the model fitting.
res_nplcm	See nplcm_read_folder
bg_color	A list with names "BrS", "SS", "pie" to specify background colors
select_latent	a vector of character strings representing latent status. It is used for just plotting a subset of latent status. For example, you can specify select_latent = "HINF" to plot all latent status information relevant to "HINF".
exact	Default is TRUE to use select_latent as exact names of causes. If you want to specify a name and plot all single or combo causes with that name, specify it to be FALSE.
top_SS	Numerical value to specify the rightmost limit on the horizontal axis for the SS panel.
cexval	Default is 1 - size of text of the SS percentages.
srtval	Default is 0 - the direction of the text for the SS percentages.
prior_shape	interval or boxplot - for how to represent prior/posteriors of the TPR/FPRs of measurements.

See Also

Other visualization functions: plot_BrS_panel, plot_check_common_pattern, plot_check_pairwise_SLORD, plot_etiology_regression, plot_etiology_side_by_side, plot_etiology_strat, plot_group_etiology, plot_panels, plot_pie_panel, plot_selected_etiology

oslerinhealth-releases/baker documentation built on Nov. 4, 2019, 11:11 p.m.