plot_group_etiology: Plot grouped (two groups) posterior and cascade distributions...

In oslerinhealth-releases/baker: Bayesian Analysis Kit for Etiology Research

Description

DN: 1. the pathogens should have been ordered as in the perch_clean_data() function. This function picks out pathogens not based on pathogen category lookup table, but based on the order of pathogens that enter the analysis.

Usage

plot_group_etiology(DIR_NPLCM, dir_taxo = NULL, ksFrac = 1,
  levellabel = 5)

Arguments

DIR_NPLCM	The file path to the result folder
dir_taxo	File path to taxonomy information (.csv). The default is NULL. If specified, it will override patho_taxo_dir in clean_options read from DIR_NPLCM.
ksFrac	A number between 0 and 1, which is the fraction of samples used to calculate kernel stats::density
levellabel	The contour line to be drawn in the final plot. Default is 5, which represents the contour of the 95 percent support region.

Value

A figure with group etiology.

See Also

Other visualization functions: plot_BrS_panel, plot_SS_panel, plot_check_common_pattern, plot_check_pairwise_SLORD, plot_etiology_regression, plot_etiology_side_by_side, plot_etiology_strat, plot_panels, plot_pie_panel, plot_selected_etiology

oslerinhealth-releases/baker documentation built on Nov. 4, 2019, 11:11 p.m.