read_actigraphy: Read Actigraphy File

In oslerinhealth/SummarizedActigraphy: Coerce Actigraphy to Summarized Experiments

Description

Read Actigraphy File

Usage

read_actigraphy(file, ..., read_function = NULL)

Arguments

file	file to read
...	additional arguments to pass to function
read_function	A custom function to read the data in.

Value

An accelerometer object from the function used to read the file.

Examples

url = paste0("https://github.com/THLfi/read.gt3x/files/",
"3522749/GT3X%2B.01.day.gt3x.zip")
destfile = tempfile(fileext = ".zip")
dl = utils::download.file(url, destfile = destfile)
gt3x_file = utils::unzip(destfile, exdir = tempdir())
gt3x_file = gt3x_file[!grepl("__MACOSX", gt3x_file)]
path = gt3x_file
res = read_actigraphy(path)
file = system.file("extdata",
"TAS1H30182785_2019-09-17.gt3x",
package = "SummarizedActigraphy")
res = read_actigraphy(file)
file = system.file("extdata",
"MECSLEEP17_left_wrist_012854_2013-12-09_11-37-24.bin.xz",
package = "SummarizedActigraphy")
res = read_actigraphy(file)

file = system.file("binfile", "ax3_testfile.cwa", package = "GGIR")
if (file.exists(file)) {
res = read_actigraphy(file)
}

file = system.file("binfile", "genea_testfile.bin", package = "GGIR")
if (file.exists(file)) {
res = read_actigraphy(file)
}

file = system.file("binfile", "GENEActiv_testfile.bin", package = "GGIR")
if (file.exists(file)) {
res = read_actigraphy(file)
}


file = "blah.exe"
testthat::expect_error(read_actigraphy(file))

oslerinhealth/SummarizedActigraphy documentation built on Aug. 20, 2020, 2:21 a.m.