Description Usage Arguments Value See Also
View source: R/plot-group-etiology.R
DN: 1. the pathogens should have been ordered as in the perch_clean_data() function. This function picks out pathogens not based on pathogen category lookup table, but based on the order of pathogens that enter the analysis.
1 | plot_group_etiology(DIR_NPLCM, dir_taxo = NULL, ksFrac = 1, levellabel = 5)
|
DIR_NPLCM |
The file path to the result folder |
dir_taxo |
File path to taxonomy information (.csv). The default is |
ksFrac |
A number between 0 and 1, which is the fraction of samples used to calculate kernel stats::density |
levellabel |
The contour line to be drawn in the final plot. Default is
|
A figure with group etiology.
Other visualization functions:
plot_BrS_panel()
,
plot_SS_panel()
,
plot_check_common_pattern()
,
plot_check_pairwise_SLORD()
,
plot_etiology_regression()
,
plot_etiology_side_by_side()
,
plot_etiology_strat_nested()
,
plot_etiology_strat()
,
plot_panels()
,
plot_pie_panel()
,
plot_selected_etiology()
,
plot_subwt_regression()
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.