Files in oslerinhealth/baker
Bayesian Analysis Kit for Etiology Research

.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
LICENSE
NAMESPACE
NEWS.md R/assign-model.R R/baker.R R/bakerUI.R R/clean-perch-data.R R/compute_functionals_of_model.R R/eda.R R/get-metric.R R/insert-bugfile-chunk.R R/nplcm-fit-NoReg.R R/nplcm-fit-Reg.R R/nplcm-read-folder.R R/nplcm.R R/plot-BrS-panel.R R/plot-SS-panel.R R/plot-check-common-pattern.R R/plot-check-pairwise-SLORD.R R/plot-etiology-side-by-side.R R/plot-group-etiology.R R/plot-panels.R R/plot-pie-panel.R R/plug-and-play.R R/set-prior-eti.R R/set-prior-tpr.R R/simulate-nplcm.R R/utils.R R/write-model.R README.md
appveyor.yml
cran-comments.md
inst/CITATION
inst/doc/baker_demo.R inst/doc/baker_demo.Rmd
inst/doc/baker_demo.html
inst/example/plot_associations.R
inst/example_data/pathogen_category_simulation.csv
inst/shiny/server.R inst/shiny/ui.R
inst/shiny/www/PERCH_logo.jpg
inst/shiny/www/PERCH_logo.svg
inst/shiny/www/ajaxloaderq.gif
inst/shiny/www/busy.js
inst/shiny/www/gates_logo.jpg
inst/shiny/www/inhealth_logo.jpg
inst/shiny/www/pcori_logo.jpg
inst/shiny/www/style.css
man/H.Rd man/I2symb.Rd man/Imat2cat.Rd man/NA2dot.Rd man/add_meas_BrS_case_Nest_Slice.Rd man/add_meas_BrS_case_Nest_Slice_jags.Rd man/add_meas_BrS_case_NoNest_Slice.Rd man/add_meas_BrS_case_NoNest_Slice_jags.Rd man/add_meas_BrS_case_NoNest_reg_Slice_jags.Rd man/add_meas_BrS_case_NoNest_reg_discrete_predictor_Slice_jags.Rd man/add_meas_BrS_ctrl_Nest_Slice.Rd man/add_meas_BrS_ctrl_NoNest_Slice.Rd man/add_meas_BrS_ctrl_NoNest_reg_Slice_jags.Rd man/add_meas_BrS_ctrl_NoNest_reg_discrete_predictor_Slice_jags.Rd man/add_meas_BrS_param_Nest_Slice.Rd man/add_meas_BrS_param_Nest_Slice_jags.Rd man/add_meas_BrS_param_NoNest_Slice.Rd man/add_meas_BrS_param_NoNest_Slice_jags.Rd man/add_meas_BrS_param_NoNest_reg_Slice_jags.Rd man/add_meas_BrS_param_NoNest_reg_discrete_predictor_Slice_jags.Rd man/add_meas_BrS_subclass_Nest_Slice.Rd man/add_meas_SS_case.Rd man/add_meas_SS_param.Rd man/as.matrix_or_vec.Rd man/assign_model.Rd man/assign_taxo_cause_list.Rd man/baker.Rd man/bakerUI.Rd man/beta_parms_from_quantiles.Rd man/beta_plot.Rd man/bin2dec.Rd man/check_dir_create.Rd man/clean_combine_subsites.Rd man/clean_perch_data.Rd man/compute_logOR_single_and_other_cause.Rd man/compute_logOR_single_cause.Rd man/create_bugs_regressor_Eti.Rd man/create_bugs_regressor_FPR.Rd man/delete_start_with.Rd man/dm_Rdate_Eti.Rd man/dm_Rdate_FPR.Rd man/expit.Rd man/extract_data_raw.Rd man/getPckg.Rd man/get_cause_by_num.Rd man/get_cause_by_taxo_group.Rd man/get_coverage.Rd man/get_direct_bias.Rd man/get_fitted_mean_nested.Rd man/get_fitted_mean_no_nested.Rd man/get_individual_data.Rd man/get_individual_prediction.Rd man/get_latent_seq.Rd man/get_marginal_rates_nested.Rd man/get_marginal_rates_no_nested.Rd man/get_metric.Rd man/get_pEti_samp.Rd man/get_plot_num.Rd man/get_plot_pos.Rd man/get_top_pattern.Rd man/init_latent_jags_multipleSS.Rd man/insert_bugfile_chunk_noreg_etiology.Rd man/insert_bugfile_chunk_noreg_meas.Rd man/insert_bugfile_chunk_reg_discrete_predictor_etiology.Rd man/insert_bugfile_chunk_reg_discrete_predictor_nonest_meas.Rd man/insert_bugfile_chunk_reg_etiology.Rd man/insert_bugfile_chunk_reg_nonest_meas.Rd man/is.error.Rd man/is_discrete.Rd man/is_intercept_only.Rd man/is_jags_folder.Rd man/is_length_all_one.Rd man/loadOneName.Rd man/load_or_install.Rd man/logOR.Rd man/logit.Rd man/lookup_quality.Rd man/lookup_side_by_side.Rd man/make_filename.Rd man/make_foldername.Rd man/make_list.Rd man/make_meas_object.Rd man/make_numbered_list.Rd man/make_template.Rd man/marg_H.Rd man/match_cause.Rd man/my_reorder.Rd man/nplcm.Rd man/nplcm_fit_NoReg.Rd man/nplcm_fit_Reg_NoNest.Rd man/nplcm_fit_Reg_discrete_predictor_NoNest.Rd man/nplcm_read_folder.Rd man/null_as_zero.Rd man/order_post_eti.Rd man/overall_uniform.Rd man/parse_nplcm_reg.Rd man/plot_BrS_panel.Rd man/plot_SS_panel.Rd man/plot_check_common_pattern.Rd man/plot_check_pairwise_SLORD.Rd man/plot_etiology_side_by_side.Rd man/plot_group_etiology.Rd man/plot_leftmost.Rd man/plot_logORmat.Rd man/plot_panels.Rd man/plot_pie_panel.Rd man/plot_selected_etiology.Rd man/read_meas_object.Rd man/rvbern.Rd man/s_date_Eti.Rd man/s_date_FPR.Rd man/set_prior_tpr_BrS_NoNest.Rd man/set_prior_tpr_SS.Rd man/set_strat.Rd man/show_dep.Rd man/show_individual.Rd man/simulate_brs.Rd man/simulate_latent.Rd man/simulate_nplcm.Rd man/simulate_ss.Rd man/sort_data_frame.Rd man/summarize_BrS.Rd man/summarize_SS.Rd man/sym_diff_month.Rd man/symb2I.Rd man/tsb.Rd man/unfactor.Rd man/unique_cause.Rd man/unique_month.Rd man/visualize_case_control_matrix.Rd man/visualize_season.Rd man/write_model_NoReg.Rd man/write_model_Reg_NoNest.Rd man/write_model_Reg_discrete_predictor_NoNest.Rd tests/testthat.R tests/testthat/test-helpers.R tests/testthat/test-symbol-conversion.r vignettes/baker_demo.Rmd
vignettes/baker_demo.html
oslerinhealth/baker documentation built on Oct. 14, 2018, 2:58 p.m.