Description Usage Arguments Details Value See Also
plot_panels()
visualizes the model outputs for communicating how the data inform final
latent disease status (etiology). It works for singleton or combo etiologies.
1 2 3 4 5 6 7 8 9 10 11 |
DIR_NPLCM |
File path to the folder containing posterior samples |
slices |
DEFAULT is "all" - to plot all measurements; Otherwise, one can
specify a list: |
bg_color |
A list with names "BrS", "SS", "pie" to specify background colors.
The current default is |
select_latent |
a vector of character strings representing latent status. It is used for
just plotting a subset of latent status. For example, you can specify |
exact |
Default is |
SS_upperlimit |
The upper limit of horizontal bar for the silver-standard subpanel (the middle panel). The default value is .25. |
eti_upperlimit |
The upper limit of horizontal bar for the etiology posterior subpanel (the rightmost panel). The default value is .4 |
silent |
Default is TRUE to not print any warning messages; FALSE otherwise. |
ref_eti0 |
reference quantiles and means; a list: pEti_ref_q, pEti_ref_mean_ord |
Missing data for BrS or SS are dropped when calculating observed measurement positive rates
A figure with two or three columns
Other visualization functions:
plot_BrS_panel()
,
plot_SS_panel()
,
plot_check_common_pattern()
,
plot_check_pairwise_SLORD()
,
plot_etiology_regression()
,
plot_etiology_side_by_side()
,
plot_etiology_strat_nested()
,
plot_etiology_strat()
,
plot_group_etiology()
,
plot_pie_panel()
,
plot_selected_etiology()
,
plot_subwt_regression()
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