Global functions | |
---|---|
.add_surveys | Source code |
.bioguess | Source code |
.bySpecies | Source code |
.calculateDeviates | Source code |
.calculateSelectivity | Source code |
.checkMonotonicity | Source code |
.check_species | Source code |
.compareVersion | Source code |
.compute_average_matrix | Source code |
.countOnes | Source code |
.createCalibrationList | Source code |
.createParameterList | Source code |
.errorReadingOutputs | Source code |
.extract_species_from_list | Source code |
.generic_pieplot | Source code |
.generic_staked_barplot | Source code |
.getBoolean | Source code |
.getConfig | Source code |
.getConfig.character | Source code |
.getConfig.list | Source code |
.getConfig.osmose.config | Source code |
.getFileAsVector | Source code |
.getFishingFrequency | Source code |
.getKey | Source code |
.getModelName | Source code |
.getPar | Source code Source code |
.getSelectivity | Source code |
.getSpecies | Source code |
.getValues | Source code |
.getVersion | Source code |
.guessSeparator | Source code |
.guessType | Source code |
.initial_length_dist | Source code |
.listTree | Source code |
.makeTree | Source code |
.mapConfig | Source code |
.mergeMaps | Source code |
.niceSeq | Source code |
.normalizeByFreq | Source code |
.osmose.barplot | Man page Source code |
.osmose.format_data_stacked | Man page Source code |
.plot_osmose_dietMatrix | Man page |
.process_mort_rate_dis | Source code |
.readCSV | Source code |
.readConfiguration | Source code |
.readFilesList | Source code |
.readInputCsv | Source code |
.readMortalityCsv | Source code |
.readOsmoseConfiguration | Source code |
.readOsmoseCsv | Source code |
.read_1D | Source code |
.read_2D | Man page Source code |
.read_MortStage | Source code |
.read_osmose_ncdf | Man page Source code |
.readthis | Source code |
.removeZeros | Source code |
.reshapeFishery | Source code |
.reshapeOsmoseTable | Source code |
.rewriteOutputs | Source code |
.rotate | Source code |
.selectivity.edge | Source code |
.selectivity.equilibrium | Source code |
.selectivity.lnorm | Source code |
.selectivity.log | Source code |
.selectivity.norm | Source code |
.selectivity_edge | Source code |
.selectivity_lnorm | Source code |
.selectivity_log | Source code |
.selectivity_norm | Source code |
.setupInitialization | Source code |
.simCatch_ini | Source code |
.simF_ini | Source code |
.strsplit2v | Source code |
.summary.generic | Source code |
.time.conv | Source code |
.warningReadingOutputs | Source code |
.writeFishingFile | Source code |
.writelabel | Source code |
F_msy | Source code |
VB | Source code |
VB_inv | Source code |
addAttr | Source code |
cacheManager | Man page Source code |
cachePath | Source code |
calculateMLF | Source code |
calculateMortality | Source code |
calculateSeasonalPattern | Source code |
calculateSelectivity | Source code |
configureCalibration | Man page Source code |
createOsmoseMaps | Source code |
existOsmoseParameter | Source code |
extract_grid_mask | Source code |
extract_grid_param | Source code |
find_species_index | Source code |
flushCache | Source code |
getAverageMortality | Source code |
getFishingBaseRate | Source code |
getFishingBaseRate.byDt | Source code |
getFishingBaseRate.byRegime | Source code |
getFishingBaseRate.byYear | Source code |
getFishingBaseRate.constant | Source code |
getFishingBaseRate.linear | Source code |
getFishingDeviatesBySeason | Source code |
getFishingDeviatesBySeason.default | Source code |
getFishingDeviatesBySeason.nonPeriodic | Source code |
getFishingDeviatesBySeason.periodic | Source code |
getFishingDeviatesByYear | Source code |
getFishingMortality | Source code |
getMortality | Source code |
getMortalityDeviation | Source code |
getOsmoseParameter | Source code |
getPredationData | Source code |
getReproductionData | Source code |
getSelectivity | Source code |
getSelectivityParameters | Source code |
getSizeSpectrum | Source code |
getSpeciesData | Source code |
getVar | Man page Source code |
getWhats | Source code |
get_var | Man page Source code |
get_var.osmose | Man page Source code |
get_var.osmose.config | Man page Source code |
getmfrow | Source code |
init_firstyear | Source code |
init_ncdf | Source code |
init_sofia | Source code |
initialize_osmose | Man page Source code |
llw | Source code |
lnorm2 | Source code |
osmose | Man page |
osmose-package | Man page |
osmose.stackedpcent | Source code |
osmose2R | Man page Source code |
osmose2R.v3r0 | Source code |
osmose2R.v3r1 | Source code |
osmosePlots2D | Source code |
osmose_calib_demo | Man page Source code |
osmose_demo | Man page Source code |
osmose_grid | Man page Source code |
plot.diet | Source code |
plot.mortalityRate | Source code |
plot.osmose | Man page Source code |
plot.osmose.abundance | Man page Source code |
plot.osmose.abundanceByAge | Man page Source code |
plot.osmose.abundanceBySize | Man page Source code |
plot.osmose.abundanceByTL | Man page Source code |
plot.osmose.biomass | Man page Source code |
plot.osmose.biomassByAge | Man page Source code |
plot.osmose.biomassBySize | Man page Source code |
plot.osmose.biomassByTL | Man page Source code |
plot.osmose.biomassPredPreyIni | Source code |
plot.osmose.config | Man page Source code |
plot.osmose.config.predation | Man page Source code |
plot.osmose.config.reproduction | Man page Source code |
plot.osmose.config.species | Man page Source code |
plot.osmose.dietMatrix | Source code Source code |
plot.osmose.dietMatrixbyAge | Source code |
plot.osmose.dietMatrixbySize | Source code |
plot.osmose.mortalityRate | Source code Source code |
plot.osmose.mortalityRateByAge | Source code |
plot.osmose.mortalityRateBySize | Source code |
plot.osmose.predatorPressure | Source code |
plot.osmose.predatorPressureByAge | Source code |
plot.osmose.predatorPressureBySize | Source code |
plot.osmose.yield | Man page Source code |
plot.osmose.yieldByAge | Man page Source code |
plot.osmose.yieldBySize | Man page Source code |
plot.osmose.yieldN | Man page Source code |
plot.osmose.yieldNByAge | Man page Source code |
plot.osmose.yieldNBySize | Man page Source code |
plot2DTsType1 | Source code |
plotDietDisType1 | Source code |
plotDietDisType2 | Source code |
plotDietType1 | Source code |
plotDietType2 | Source code |
plotGrowthType1 | Source code |
plotMortRateType1 | Source code |
plotMortRateType2 | Source code |
plotReproductionType1 | Source code |
plotReproductionType2 | Source code |
print.osmose | Man page Source code |
print.summary.osmose | Man page Source code |
process.dietMatrix | Source code |
process.mortalityRate | Source code |
read.biomass | Source code |
read.cal | Source code |
read.fecundity | Source code |
read.yield | Source code |
readOsmoseConfiguration | Man page Source code |
readOsmoseFiles | Man page Source code |
read_osmose | Man page Source code |
rebinning | Source code |
report | Man page Source code |
report.osmose | Man page Source code |
runOsmose | Man page Source code |
run_osmose | Man page Source code |
setOsmoseMaps | Source code |
setOsmoseMaps.prediction.niche.models | Source code |
summary.osmose | Man page Source code |
summary.osmose.biomass | Source code |
summary.osmose.dietMatrix | Man page Source code |
summary.osmose.meanTL | Source code |
summary.osmose.meanTLCatch | Source code |
summary.osmose.mortalityRate | Man page Source code |
updateCache | Man page Source code |
update_ltl | Man page Source code |
update_maps | Man page Source code |
update_osmose | Man page Source code |
viewDataList | Source code |
write.osmose | Man page Source code |
writeFishingFiles | Source code |
writeMaps | Source code |
writeOsmoseParameters | Source code |
write_osmose | Man page Source code |
write_osmose.default | Source code |
write_osmose.list | Source code |
write_osmose.osmose.configuration | Source code |
write_osmose.osmose.initialization | Source code |
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