API for osmose-model/osmose
Object Oriented Simulator of Marine Ecosystems

Global functions
addAttr Source code
barplotCI Source code
bySpecies Source code
calculateDeviates Source code
calculateSeasonalPattern Source code
calculateSelectivity Source code
check_species Source code
compute_average_matrix Source code
configureCalibration Man page Source code
countOnes Source code
createCalibrationList Source code
createOsmoseMaps Source code
createParameterList Source code
errorReadingOutputs Source code
existOsmoseParameter Man page Source code
extract_grid_mask Man page Source code
extract_grid_param Man page Source code
find_species_index Man page Source code
getAverageMortality Man page Source code
getBoolean Source code
getConfig Source code
getConfig.character Source code
getConfig.list Source code
getConfig.osmose.config Source code
getFileAsVector Source code
getFishingBaseRate Man page Source code
getFishingBaseRate.byDt Man page Source code
getFishingBaseRate.byRegime Source code
getFishingBaseRate.byYear Man page Source code
getFishingBaseRate.constant Man page Source code
getFishingBaseRate.linear Man page Source code
getFishingDeviatesBySeason Source code
getFishingDeviatesBySeason.default Source code
getFishingDeviatesBySeason.nonPeriodic Source code
getFishingDeviatesBySeason.periodic Source code
getFishingDeviatesByYear Source code
getFishingFrequency Source code
getFishingMortality Man page Source code
getKey Source code
getModelName Source code
getMortality Man page Source code
getMortalityDeviation Man page Source code
getOsmoseParameter Man page Source code
getPar Source code
getSelectivity Source code
getSelectivityParameters Source code
getSizeSpectrum Man page Source code
getSpecies Source code
getValues Source code
getVar Man page Source code
getVar.osmose Man page Source code
getVersion Source code
getmfrow Source code Source code
guessSeparator Source code
guessType Source code
isFALSE Man page Source code
listTree Source code
makeTransparent Source code
makeTree Source code
make_movement_netcdf Man page Source code
niceSeq Source code
normalizeByFreq Source code
osmose Man page
osmose-package Man page
osmose2R Man page Source code
osmose2R.v3r0 Source code
osmose2R.v3r1 Source code
osmose2R.v3r2 Source code
osmosePlots2D Source code
plot.osmose Man page Source code
plot.osmose.abundance Source code
plot.osmose.biomass Source code
plot.osmose.yield Source code
plot.osmose.yieldN Source code
plot2DTsType1 Source code
plot2DTsType2 Source code
plot2DTsType3 Source code
plot2DTsType4 Source code
plot2DType1 Source code
plot2DType2 Source code
plot2DType3 Source code
plotCI Source code
print.osmose Man page Source code
print.summary.osmose Man page Source code
process.dietMatrix Source code
process.mortalityRate Source code
readFilesList Source code
readInputCsv Source code
readMortalityCsv Source code
readOsmoseConfiguration Man page Source code Source code
readOsmoseCsv Source code
readOsmoseFiles Man page Source code
read_1D Source code
read_2D Source code
read_MortStage Source code
read_osmose Man page Source code
recycleArguments Source code
removeZeros Source code
report Man page Source code
report.osmose Man page Source code
reshapeOsmoseTable Source code
rewriteOutputs Source code
runOsmose Man page Source code
run_osmose Man page Source code
selectivity.edge Source code
selectivity.equilibrium Source code
selectivity.lnorm Source code
selectivity.log Source code
selectivity.norm Source code
setOsmoseMaps Source code
setOsmoseMaps.prediction.niche.models Source code
strsplit2v Source code
summary.generic Source code
summary.osmose Man page Source code
summary.osmose.output.biomass Source code
summary.osmose.output.dietMatrix Man page Source code
summary.osmose.output.meanTL Source code
summary.osmose.output.meanTLCatch Source code
summary.osmose.output.mortalityRate Man page Source code
viewDataList Source code
warningReadingOutputs Source code
write.osmose Source code
writeFishingFile Source code
writeFishingFiles Man page Source code
writeMaps Source code
writeOsmoseParameters Source code
write_osmose Man page Source code
osmose-model/osmose documentation built on Oct. 19, 2018, 1:12 p.m.