cacheManager | Manage the cache |
configureCalibration | Reads calibration parameters from an osmose.config list. |
dot-osmose.barplot | Plots a barplot, with xlabels rotated with a 45degree angle |
dot-osmose.format_data_stacked | Reformat the data into the ggplot2 stacked plot format. It... |
dot-plot_osmose_dietMatrix | Plots diet matrix |
dot-read_2D | Generic function to read 2D output files (dietMatrix,... |
dot-read_osmose_ncdf | Function to read osmose netcdf files |
get_var | Get variable from an 'osmose'-like object. |
get_var.osmose | get_var method for osmose outputs objects |
get_var.osmose.config | get_var method for osmose configuration objects |
initialize_osmose | Create initialization file for an OSMOSE configuration |
osmose_calib_demo | Generates Osmose configuration files to run an Osmose demo. |
osmose_demo | Generates required OSMOSE configuration files to run a demo. |
osmose_grid | create OSMOSE ncdf grid (in development) |
osmose-package | OSMOSE: Modelling Marine Exploited Ecosystems |
plot.osmose | Plot method for osmose objects |
plot.osmose.config | Plot method for 'osmose.config' objects |
print.osmose | Print information for an 'osmose' object |
print.summary.osmose | Print the summary informations about Osmose outputs |
read_osmose | Read OSMOSE outputs into an R object |
readOsmoseConfiguration | Reads Osmose configuration files. |
readOsmoseFiles | Read Osmose output file |
report | Report method |
report.osmose | Report method for 'osmose' objects |
run_osmose | Run an OSMOSE configuration |
summary.osmose | 'osmose' object summaries |
summary.osmose.dietMatrix | Title |
summary.osmose.mortalityRate | Title |
updateCache | Update the cache for the different function |
update_ltl | Update LTL ncdf files to version 4 format |
update_maps | Update OSMOSE maps from csv (v3.x) to ncdf (v4.2+) |
update_osmose | Update OSMOSE configuration |
write_osmose | Write data in osmose format |
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