plot_pc_variance: Plot PC Variance

In pachterlab/sleuth: Tools for investigating RNA-Seq

Plot PC Variance

Description

Plot PC variances retained by percentage with option to compare specified PC

Usage

plot_pc_variance(obj, use_filtered = TRUE, units = "est_counts",
  pca_number = NULL, scale = FALSE, PC_relative = NULL, ...)

Arguments

obj	a sleuth object
use_filtered	if TRUE, use filtered data. otherwise, use all data
units	either 'est_counts' ('scaled_reads_per_base' for gene_mode) or 'tpm'
pca_number	user input on how many PC to display, otherwise default is 5
scale	determines scaling
PC_relative	gives the option to compare subsequent principal components and their contributions

Value

a ggplot object

pachterlab/sleuth documentation built on Nov. 17, 2022, 4:51 p.m.