sleuth_to_matrix | R Documentation |
Convert a sleuth object to a matrix with the condition names.
sleuth_to_matrix(obj, which_df, which_units)
obj |
a |
which_df |
character vector of length one. Which type of data to use ("obs_norm" or "obs_raw") |
which_units |
character vector of length one. Which units to use ("tpm" or "est_counts" (for transcript-level analyses) or "scaled_reads_per_base" (for gene-level analyses)) |
a matrix which contains a matrix of target_ids and transcript (or gene) expression in which_units
.
Note this currently does not support returning raw values for gene-level counts or TPMs.
sleuth_matrix <- sleuth_to_matrix(sleuth_obj, 'obs_norm', 'tpm') head(sleuth_matrix) # look at first 5 transcripts, sorted by name
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