create_sens_dirs: Create standard sensitivity directories

In pacific-hake/hake-assessment: Stock Assessment for Pacific Hake

Create standard sensitivity directories

Description

The SRG requests that the following sensitivities are run as standard protocol for the base model on an annual basis. This function copies and alters the input files from a base model setting up all of the required sensitivity runs.

Usage

create_sens_dirs(dir_version, sens_dir_name = "03-sensitivity-models")

Arguments

dir_version	A file path to the current model version of interest. For example, ⁠/srv/hake/models/2023/01-version⁠. This directory will contain subdirectories that store folders for the base model and a separate folder for sensitivities.
sens_dir_name	Name of the sensitivity directory found in the dir_version directory

Value

A string is returned providing the path to the sensitivity directory. Files are written to the disk inside the following directories:

• 01-h-prior-mean-low

• 02-h-fix-high

• 03-sigma-r-fix-low

• 04-sigma-r-fix-high

• 05-m-02-sd

• 06-m-03-sd

• 07-m-hamel-prior

• 08-age-1-survey,

• 09-comp-weight-harmonic-mean

• 10-tv-select-phi-extra-low

• 11-tv-select-phi-low

• 12-tv-select-phi-high

• 13-max-sel-age-'5

• 14-max-sel-age-7

• 15-max-sel-age-8

• 16-zero-sum-constraint

Author(s)

Kelli F. Johnson

pacific-hake/hake-assessment documentation built on Jan. 14, 2025, 9:12 p.m.