load_extra_mcmc_atage: Load at-age data chunks from a list of report file output,...

In pacific-hake/hake-assessment: Stock Assessment for Pacific Hake

Load at-age data chunks from a list of report file output, and calculate the medians at-age by year

Description

Load at-age data chunks from a list of report file output, and calculate the medians at-age by year

Usage

load_extra_mcmc_atage(
  reps,
  verbose = TRUE,
  txt = "output",
  scale = 1,
  start_yr = NULL,
  end_yr = NULL,
  ...
)

Arguments

reps	A list of vectors representing one element per report file
verbose	Logical. Show messages
txt	Text to write to the screen while processing
scale	Value to divide the values by in the output table
start_yr	Filter years earlier than this out of the results. If NULL, no filtering will occur for the start year
end_yr	Filter years greater than this out of the results. If NULL, no filtering will occur for the end year
...	Absorbs arguments meant for other functions

Value

A list with one element being the data frame of values by year with every posterior included (atage) and the other being a much smaller data frame containing the median across posteriors by year for the values (med)

pacific-hake/hake-assessment documentation built on Jan. 14, 2025, 9:12 p.m.