plot_autocor: Create an autocorrelation plot for a particular parameter

In pacific-hake/hake-assessment: Stock Assessment for Pacific Hake

Create an autocorrelation plot for a particular parameter

Description

Create an autocorrelation plot for a particular parameter

Usage

plot_autocor(
  model,
  post_regex,
  lag_max = 20,
  y_lim = c(-1, 1),
  bar_width = 0.5,
  fill = main_fill,
  alpha = 0.3,
  ...
)

Arguments

model	A model list, created by create_rds_file()
post_regex	A regular expression that matches one parameter name and nothing else
lag_max	See coda::autocorr.plot()
y_lim	A vector of start and end limits for the y-axis
bar_width	The width of the bars
fill	The fill color for the bars
alpha	The transparency for the bar fill
...	Absorbs arguments intended for other functions

Value

A ggplot2::ggplot() object

pacific-hake/hake-assessment documentation built on Jan. 14, 2025, 9:12 p.m.