plot_bubbles: Make a bubble plot from the given data
In pacific-hake/hake-assessment: Stock Assessment for Pacific Hake

plot_bubbles

R Documentation

Make a bubble plot from the given data

Description

Make a bubble plot from the given data

Usage

plot_bubbles(
  d,
  clines = age_bubble_cohorts,
  val_col_nm = "Proportion",
  tick_prop = 1,
  vjust_x_labels = -1.5,
  remove_yr_labels = NULL,
  mean_age = NULL,
  mean_age_line_color = "red",
  mean_age_line_width = 1.5,
  mean_age_line_type = "solid",
  diag_line_color = age_diag_line_color,
  diag_line_width = age_diag_line_width,
  diag_line_type = age_diag_line_type,
  yrs = NULL,
  x_labs_mod = 5,
  leg_pos = "none",
  point_alpha = main_alpha,
  point_fill = main_fill,
  point_color = "black",
  xlim = c(1966, year(Sys.Date())),
  show_x_axis_labels = TRUE,
  ...
)

Arguments

`d`	a `tibble::tibble()` of the data in long format with column names `Year`, `Age`, and the column name given by `val_col_nm`
`clines`	An optional vector of years to draw cohort lines through
`val_col_nm`	The name of the column in `d` to use for the values
`tick_prop`	A value that the length of the major tick marks are multiplied by. This proportion must be set by trial and error. Make sure to change `vjust_x_labels` so the labels are not overlapping the lines or are too far away from the lines
`vjust_x_labels`	Adjustment to move the x-axis tick labels and label up or down. Negative numbers move down
`remove_yr_labels`	A vector of years to remove the ,labels for in case they are overlapping
`mean_age`	A two-column tibble with column names `Year` and `Age` where each row contains a year and `Age` represents the mean age for each year
`mean_age_line_color`	The line color for the mean age line
`mean_age_line_width`	The line width for the mean age line
`mean_age_line_type`	The line type for the mean age line
`diag_line_color`	The line color for the cohort diagonal lines
`diag_line_width`	The line width for the cohort diagonal lines
`diag_line_type`	The line type for the cohort diagonal lines
`yrs`	A vector of 2, for the years to show on the plot
`x_labs_mod`	How many years between year labels on the x-axis
`leg_pos`	See the `legend.position` parameter in `ggplot2::theme()`
`point_alpha`	Transparency of the bubble fill
`point_fill`	Color of the bubble fill
`point_color`	Color of the bubble outline
`xlim`	Limits for the x-axis
`show_x_axis_labels`	Logical. If `TRUE`, show the x-axis title and tick labels