plot_maturity_ogives: Create a plot containing the maturity ogives by year on a...

In pacific-hake/hake-assessment: Stock Assessment for Pacific Hake

Create a plot containing the maturity ogives by year on a single panel with inset for an area of interest to contain a detailed view

Description

Create a plot containing the maturity ogives by year on a single panel with inset for an area of interest to contain a detailed view

Usage

plot_maturity_ogives(
  show_inset = TRUE,
  from = c(xmin = 2, xmax = 6.5, ymin = 0.8, ymax = 1),
  to = c(xmin = 5, xmax = 14, ymin = 0.05, ymax = 0.6),
  x_breaks = sort(unique(d$age)),
  x_label_every_nth = 5,
  vert_lines = 5,
  vert_lines_type = "dashed",
  vert_lines_color = "grey20",
  vert_lines_thickness = 0.5,
  eq_line_color = "black",
  fore_line_color = "red",
  eq_x_start_legend = NULL,
  eq_y_start_legend = 0.1,
  eq_fore_alpha = 0.7,
  eq_fore_line_width = 3,
  leg_line_size_cm = 1,
  leg_font_size = 14,
  space_between_legend_items_cm = 0.5
)

Arguments

show_inset	Logical. If TRUE, show the inset panel
from	The limits of the inset on the main plot to extract. See ggmagnify::geom_magnify()
to	The limits on the main panel of the location to place the inset. See ggmagnify::geom_magnify()
x_breaks	A vector of values on the x axis to show ticks for
x_label_every_nth	Every nth value on the x axis, label the tick mark. So if this is 2, label every second tick age on the x axis
vert_lines	A vector of ages to draw vertical lines for, to aid the eye. If NULL, draw no lines.
vert_lines_type	Type of vertical lines if vert_lines is TRUE
vert_lines_color	Color of vertical lines if vert_lines is TRUE
vert_lines_thickness	Thickness of vertical lines if vert_lines is TRUE
eq_line_color	Color for the Equilibrium line
fore_line_color	Color for the Forecast line
eq_x_start_legend	X value where the legend for the Equilibrium line and the Forecast line starts. Will likely change each year. If NULL, the default of outside the plotting area, under the legend will be used
eq_y_start_legend	Y value where the legend for the Equilibrium line and the Forecast line starts. Will likely change each year
eq_fore_alpha	The transparency value for the Equilibrium and Forecast lines
eq_fore_line_width	The line width for the Equilibrium and Forecast lines
leg_line_size_cm	The legend line length in cm
leg_font_size	The legend font size
space_between_legend_items_cm	Vertical space in cm between the legend items

Details

The package data frame maturity_estimates_df is used. The 'Equilibrium' and 'Forecast' legend items are not part of the legend, they are annotated text and have to be placed manually if you change the size of this plot. use the arguments eq_x_start_legend and eq_y_start_legend to do so.

Value

A ggplot2::ggplot() object

pacific-hake/hake-assessment documentation built on Jan. 14, 2025, 9:12 p.m.